INDIANAPOLIS — Indiana University researchers from the School of Informatics and Computing at IUPUI and the School of Medicine, in collaboration with Indiana University Health, are developing new diagnostic tests that combine speed and sensitivity for rapid detection of the viral strain. Read full story here.
Category: News
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Postdoctoral fellowship positions open at Janga lab
We have 3 new openings for postdoctoral fellowship positions at our lab. Please visit http://www.iupui.edu/~jangalab/join/ for more information on the same.
Swapna Vidhur Daulatabad’s work on resolving RNA secondary structure using single-molecule approach
Swapna Vidhur Daulatabad’s work on resolving RNA secondary structure using single-molecule approach was invited for an oral presentation at Rustbelt RNA meeting 2019 at Columbus, Ohio. The talk was highlighted at the meeting and well appreciated among the RNA research community.
Janga lab awarded two grants from National Science Foundation to develop experimental and computational approaches for nanopore sequencing
Dr. Sarath Chandra Janga has been awarded an NSF EAGER grant for his project “Algorithmic frameworks and resources for mapping RNA modifications from single molecule direct RNA-sequencing data”. He is also co-PI on a SHF grant awarded by NSF for “Automated Algorithm/Hardware Co-design for Accelerating Nanopore Base-calling”. The news is featured in the IUPUI research enterprise letter here.
Two single molecule sequencing studies are invited for oral presentation talks at GLBIO’19 conference in Madison, Wisconsin
Two abstracts highlighting lab’s work on single molecule sequencing approaches for mapping RNA modifications and structure from graduate PhD students, are invited for oral presentation of their work at Great Lakes Bioinformatics conference 2019 held in Wisconsin, Madison. Both students have also been offered ISCB travel fellowships for attending the conference.
Title: RNA structure elucidation at single molecule resolution using an integrated framework of long read sequencing and machine learning
Speaker: Swapna Vidhur Daulatabad
Title: Deep learning framework for accurate transcriptome-wide identification of Gm RNA modification events at single molecule resolution from direct RNA sequencing data
Speaker: Sasank Vemuri
Two studies first authored by graduate master’s students from the lab are accepted for paper presentation at ICIBM’19 conference in Columbus, Ohio
Two studies from the lab are accepted as full length papers and invited for oral presentation for the upcoming International Conference on Intelligent Biology and Medicine (ICIBM 2019) in Columbus, Ohio
Title: Long non-coding RNA expression levels modulate cell-type specific splicing patterns by altering their interaction landscape with RNA-binding proteins
Authors: Felipe Wendt Porto, Swapna Vidhur Daulatabad and Sarath Chandra Janga
Title: Human protein-RNA interaction network is highly stable across vertebrates
Author: Aarthi Ramakrishnan and Sarath Chandra Janga
Dr. Sarath Janga and Dr. Heidi Dvinge are hosting a special session “RNA Sequence to Structure” at Great Lakes Bioinformatics Conference at UW Madison in May 2019
Dr. Sarath Janga and Dr. Heidi Dvinge are hosting a special session “RNA Sequence to Structure” at Great Lakes Bioinformatics Conference at UW Madison in May 2019.
Please see the links below for submission tracks and program details.
Direct RNA sequencing based cytosine methylation prediction work employing deep learning models gets invited for a lightening talk at NCM-2018
Click here for agenda.
New study on Il9 enhancer landscape in Nature Communications
Our lab member co-authored study on the transcriptional landscape of enhancer modulating Il9 expression in multiple lineages is now published in Nature Communications.
Raja Kadumuri’s work on identification of m5C modification events at single molecule resolution
Raja Kadumuri’s work on identification of m5C modification events at single molecule resolution from direct RNA sequencing of human cell lines is invited for an oral presentation at Rustbelt RNA Meeting 2018 in Columbus, Ohio” and link to the rustbelt meeting talk slots